bioinformatics-tool

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Scissor package

A modular annotation tool for genomic variants

RNA sequencing analysis software

🚀 seqfu - Sequece Fastx Utilities

Blender plugin to process biological data and molecular work.

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

🌺 reference-free transcriptome assembly for short and long reads

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

⛓ Correct misassemblies using linked AND long reads

📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Genomics data visualization in Python by using matplotlib.

A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes