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Isaac Virshup ivirshup

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Helmholtz Munich
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Pinned

scverse/scanpy Public

Single-cell analysis in Python. Scales to >1M cells.

Python 1.4k 482
scverse/anndata Public

Annotated data.

Python 342 124
constclust Public

Consistent Clusters for scRNA-seq

Python 11
anndata-benchmarks Public

Benchmarks of AnnData using asv

Python 2 1
sc-interchange Public

Better interchange for single cell tools

8

791 contributions in the last year

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Activity overview

Contributed to scverse/scverse.github.io, scverse/anndata, scverse/scanpy and 67 other repositories

Contribution activity

February 2023

Created 15 commits in 4 repositories

Created a pull request in scverse/scanpy that received 3 comments

matplotlib 3.7 compat

+1 −1 • 3 comments

Opened 7 other pull requests in 3 repositories

scverse/scanpy 2 merged 1 open

Revert "Stephen/spaceranger2.0" Feb 17
Update dev branch Feb 16
update anndata-dev tests to install anndata test deps Feb 16

scverse/anndata 3 merged

Bump submodule Feb 8
Fix outer concat when generating fill obsm values Feb 6
Bump memory limit in test Feb 2

scverse/anndata-tutorials 1 merged

Rerender dask array tutorial Feb 8

Reviewed 6 pull requests in 4 repositories

scverse/anndata-tutorials 2 pull requests

(feat): {read,write}_dispatched notebook Feb 16
Add tutorial for awkward arrays Feb 9

scverse/anndata 2 pull requests

first attempt to support awkward arrays Feb 7
Tuned Memory Limits for Tests Feb 7

scverse/spatialdata 1 pull request

Io/hot fix Feb 16

scverse/scverse-tutorials 1 pull request

Basic tutorial Feb 7

Created an issue in scikit-hep/awkward that received 14 comments

`ak.merge_union_of_records` not merging `Union[var * {a: int, b:int}, var * {a: int}]`

Version of Awkward Array 2.0.7 Description and code to reproduce I've found what I think is a bug in the recently added merge_union_of_records. Wit…

14 comments

Opened 9 other issues in 3 repositories

scverse/anndata 3 open 1 closed

scikit-hep/awkward 4 closed

saezlab/scverse_hackathon 1 open

User story: get genomic features for a gene Feb 16