#
singularity-container
Here are 145 public repositories matching this topic...
Generate custom Docker and Singularity images, and minimize existing containers
linux
docker
science
dockerfile
reproducible-research
containers
neuroscience
singularity-container
nipype
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Jul 28, 2021 - Python
ArangoGutierrez
commented
Apr 24, 2019
@bilke reported an error on slack
Apr 24 15:40:15 singularity1 nomad[789]: 2019-04-24T15:40:15.196+0200 [INFO ] client.alloc_runner.task_runner.task_hook.logmon.nomad: opening fifo: alloc_id=f9bd314e-57d3-56bb-bbb8-8eb9ff6f87e5 task="moo moo" @module=logmon path="/var/nomad/alloc/f9bd314e-57d3-56bb-bbb8-8eb9ff6f87e5/alloc/logs/.moo moo.stdout.fifo" timestamp=2019-04-24T15:40:15.195+0200
Singularity Global Client for container management
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Dec 16, 2020 - Python
singularity and Docker containers to easily get started with common dicom tools
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Updated
May 3, 2020 - Dockerfile
convert a singularity image back to Docker, full circle! #containerfriends
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Updated
May 29, 2020 - Shell
Scan Singularity container images using a Clair server
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Updated
Jun 21, 2021 - Python
Python based plotting package for CASA MeasurementSet
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Updated
May 20, 2021 - Python
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
nextflow
bioinformatics-pipeline
sequence-alignments
singularity-container
sequence-alignment
barcoding
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Updated
Jul 19, 2021 - Shell
Singularity in Docker!
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Updated
Jul 15, 2021 - Dockerfile
example builders for Singularity images using continuous integration
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Updated
Aug 15, 2019
The Singularity on Nomad tutorial documents how to deploy Singularity on Nomad.
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Oct 6, 2017 - Shell
Approximate layers - TensorFlow extension
python
docker-container
tensorflow
convolution
singularity-container
tensorflow-library
approximate-computing
multipliers
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Updated
Sep 4, 2020 - C
screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
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Updated
Oct 29, 2020 - Nextflow
A minimal working example of DMTCP checkpoint-restart inside a Singularity container.
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Updated
Dec 23, 2018 - Shell
BIDS app for NeuroData's MRI to Graphs pipeline
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Updated
Jan 30, 2018 - TeX
Singularity: Brood War in a Container
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Apr 30, 2021 - Shell
ISC 2021 -- Getting Started with Containers on HPC
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Jun 24, 2021 - C++
The Singularity Community Catalog of Singularity* recipe files.
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Jul 29, 2021 - Singularity
Singularity syntax highlighting support for Atom
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Updated
Feb 24, 2020 - JavaScript
getting started with dicom in python
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Jun 1, 2020 - JavaScript
Singularity container recipes to run the paraview visualizer
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Nov 27, 2018
web application to serve (simple) singularity images
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Updated
Mar 19, 2017 - Python
static API for community analysis of Singularity Hub containers
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Updated
Jun 22, 2018 - Python
Singularity tensorflow containers for research and development
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Jul 7, 2021 - Shell
An example of using stools-clair for Travis and Circle Continuous Integration
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Apr 27, 2018
xml syntax file for formatting Singularity recipes in gedit
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Oct 22, 2019 - Vim script
user interface for managing containers with sregistry global client, and making recipes
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Apr 20, 2018 - HTML
Repo2singularity: Wrapper around repo2docker producing Jupyter enabled Singularity images.
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Updated
May 27, 2020 - Python
command line tool for general HPC functions using Singularity containers
python
flask
containers
singularity
container-management
singularity-container
singularity-containers
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May 1, 2017 - CSS
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Version of Singularity:
3.0.3
Expected behavior
Some progress or update information during the creation of the SIF file.
Actual behavior
During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.
Steps to reproduce behavior
I was executing a few “larger” builds through the bui