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Commits on Apr 27, 2022

  1. Merge pull request #1027 from heuermh/update-guava 

    Update guava dependency version to 31.1-jre
    @josemduarte
    josemduarte committed Apr 27, 2022
    89a40ff

Commits on Apr 3, 2022

  1. Update guava dependency version to 31.1-jre.

    @heuermh
    heuermh committed Apr 3, 2022
    717e333

Commits on Feb 25, 2022

  1. Merge pull request #1023 from zedomel/master 

    Fix #929
    @josemduarte
    josemduarte committed Feb 25, 2022
    35c2835

Commits on Feb 15, 2022

  1. Merge pull request #1 from zedomel/issue929 

    Fix NullPointerException
    @zedomel
    zedomel committed Feb 15, 2022
    2124007

  2. Fix NullPointerException

    @zedomel
    zedomel committed Feb 15, 2022
    4186eed

Commits on Feb 1, 2022

  1. Updating changelog

    @josemduarte
    josemduarte committed Feb 1, 2022
    8267ca5

  2. [maven-release-plugin] prepare for next development iteration

    @josemduarte
    josemduarte committed Feb 1, 2022
    91412e2

  3. [maven-release-plugin] prepare release biojava-6.0.5

    @josemduarte
    josemduarte committed Feb 1, 2022
    d0055ab

  4. Removing a utility tool that was really internal to biojava, but that… 

    … was using external resources that are now gone.

Also removed some tests that were using external resources.
    @josemduarte
    josemduarte committed Feb 1, 2022
    0e47572

  5. Merge pull request #1020 from josemduarte/handle_null_pdbids 

    Handling some nulls in PdbId creation
    @josemduarte
    josemduarte committed Feb 1, 2022
    c7f5ef1

  6. Make sure there's no ambiguity in constructor to call

    @josemduarte
    josemduarte committed Feb 1, 2022
    0fe0e26

  7. More readable

    @josemduarte
    josemduarte committed Feb 1, 2022
    93d299c

Commits on Jan 31, 2022

  1. Handling some nulls in PdbId creation, #1019

    @josemduarte
    josemduarte committed Jan 31, 2022
    c84cf73

Commits on Jan 5, 2022

  1. Updating after release

    @josemduarte
    josemduarte committed Jan 5, 2022
    f5791b6

  2. [maven-release-plugin] prepare for next development iteration

    @josemduarte
    josemduarte committed Jan 5, 2022
    ed83fb7

  3. [maven-release-plugin] prepare release biojava-6.0.4

    @josemduarte
    josemduarte committed Jan 5, 2022
    6445a87

  4. Merge pull request #1012 from richarda23/fix-ontology-demo 

    Ontology-demo filename typo
    @josemduarte
    josemduarte committed Jan 5, 2022
    264ebe1

  5. Merge pull request #998 from richarda23/#944-testcoverage 

    #944 testcoverage
    @josemduarte
    josemduarte committed Jan 5, 2022
    a16d533

Commits on Jan 4, 2022

  1. Merge pull request #1015 from biojava/dependabot/maven/org.apache.log… 

    …ging.log4j-log4j-api-2.17.1

Bump log4j-api from 2.17.0 to 2.17.1
    @josemduarte
    josemduarte committed Jan 4, 2022
    351490b

  2. Merge pull request #1014 from biojava/dependabot/maven/org.apache.log… 

    …ging.log4j-log4j-core-2.17.1

Bump log4j-core from 2.17.0 to 2.17.1
    @josemduarte
    josemduarte committed Jan 4, 2022
    b498c5a

  3. Bump log4j-api from 2.17.0 to 2.17.1 

    Bumps log4j-api from 2.17.0 to 2.17.1.

---
updated-dependencies:
- dependency-name: org.apache.logging.log4j:log4j-api
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
    @dependabot
    dependabot[bot] committed Jan 4, 2022
    00d0c67

  4. Bump log4j-core from 2.17.0 to 2.17.1 

    Bumps log4j-core from 2.17.0 to 2.17.1.

---
updated-dependencies:
- dependency-name: org.apache.logging.log4j:log4j-core
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
    @dependabot
    dependabot[bot] committed Jan 4, 2022
    d7e2b0f

  5. fix typo in filename

    @otter606
    otter606 committed Jan 4, 2022
    4b6ea49

Commits on Jan 3, 2022

  1. address PR comment

    @otter606 @heuermh
    otter606 authored and heuermh committed Jan 3, 2022
    0df9cca

  2. fixes #1008

    @otter606 @heuermh
    otter606 authored and heuermh committed Jan 3, 2022
    9e44b24

  3. test MSA

    @otter606
    otter606 committed Jan 3, 2022
    3c045a7

  4. proper format of floating point (double) variable.

    @aalhossary @heuermh
    aalhossary authored and heuermh committed Jan 3, 2022
    940128b

  5. remove duplicate generics

    @otter606
    otter606 committed Jan 3, 2022
    4b33b8f

  6. tidy up RNASeqTest

    @otter606
    otter606 committed Jan 3, 2022
    570fdac

  7. simplify generics in RNASequence

    @otter606
    otter606 committed Jan 3, 2022
    c1a114f

Commits on Jan 2, 2022

  1. Strand unit test, taxonomyID unit test

    @otter606
    otter606 committed Jan 2, 2022
    91f4e4c

  2. Strand unit test

    @otter606
    otter606 committed Jan 2, 2022
    76c3bd4

  3. fix deprecated assertions

    @otter606
    otter606 committed Jan 2, 2022
    9f4206b

Commits on Dec 18, 2021

  1. Bump log4j-api from 2.16.0 to 2.17.0 

    Bumps log4j-api from 2.16.0 to 2.17.0.

---
updated-dependencies:
- dependency-name: org.apache.logging.log4j:log4j-api
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
    @dependabot @heuermh
    dependabot[bot] authored and heuermh committed Dec 18, 2021
    3ce6f75

Commits on Dec 14, 2021

  1. Updating after release

    @josemduarte
    josemduarte committed Dec 14, 2021
    f8cf82c
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