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DNA Alignment k #889

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rgb4268 opened this issue Sep 14, 2020 · 1 comment
Open

DNA Alignment k #889

rgb4268 opened this issue Sep 14, 2020 · 1 comment
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@rgb4268
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@rgb4268 rgb4268 commented Sep 14, 2020

I know this is a question, but is there a way to align a DNA sequence to a protein? Can we get the location of the sequence on the protein?
@josemduarte
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@josemduarte josemduarte commented Sep 14, 2020

How about by translating DNA to protein and then doing a local alignment? Translating is quite easy, see #888 . Regarding alignments, see the relevant part of the tutorial: https://github.com/biojava/biojava-tutorial/blob/master/alignment/README.md
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@josemduarte @rgb4268
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