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Extend dssp implementation to also support the promotif standard #764

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josemduarte opened this issue Apr 22, 2018 · 2 comments
Open

Extend dssp implementation to also support the promotif standard #764

josemduarte opened this issue Apr 22, 2018 · 2 comments
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help wanted new feature
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BioJava 6.0.0

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@josemduarte
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@josemduarte josemduarte commented Apr 22, 2018 •
edited

Now that the dssp algorithm for secondary structure assignment is implemented in biojava (see #336), it would be nice to also have the promotif one that extends it slightly. Ideally we should be able to support both traditional dssp and promotif.
@josemduarte josemduarte added this to the BioJava 5.1.0 milestone Apr 22, 2018
@Shubhangi2901
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@Shubhangi2901 Shubhangi2901 commented Mar 27, 2020

Hi @josemduarte I would love to work on this new feature!
@josemduarte
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@josemduarte josemduarte commented Mar 30, 2020

Sounds good @Shubhangi2901 , we are always happy to get help.

FYI there's a secondary structure tutorial: https://github.com/biojava/biojava-tutorial/blob/master/structure/secstruc.md

The full implementation and tutorial was done by @lafita
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