ilastik

Repositories

• ilastik

  ilastik-shell, applets, and workflows to string them together.
  Python 102 217 495 (11 issues need help) 27 Updated Sep 25, 2020

• volumina

  Volume Slicing and Editing
  Python 52 24 30 12 Updated Sep 25, 2020

• ilastik-conda-recipes

  Conda recipes for building ilastik dependencies.
  Shell 14 7 9 5 Updated Sep 25, 2020

• tiktorch

  Tiktorch
  Python MIT 8 1 19 5 Updated Sep 23, 2020

• ilastik.github.io
  HTML 16 2 20 5 Updated Sep 21, 2020

• nifty

  Forked from chaubold/nifty

  nifty cPP and Python
  C++ MIT 15 0 0 0 Updated Sep 18, 2020

• marching_cubes

  Standalone marching cubes implementation and Python bindings
  C++ BSD-3-Clause 9 61 1 1 Updated Sep 17, 2020

• ilastik4ij

  ImageJ plugins to run ilastik workflows
  Java MIT 13 8 14 5 Updated Sep 11, 2020

• bioimage-io-models

  Ilastik models for the bioimage.io model zoo
  HTML 2 1 2 1 Updated Sep 10, 2020

• ndstructs

  Utility classes to deal with 5d arrays
  Python MIT 2 0 2 1 Updated Sep 8, 2020

• dpct

  Forked from chaubold/dpct

  Dynamic Programming Cell Tracking Solver
  C++ MIT 3 0 0 0 Updated Jul 17, 2020

• ilastik-container

  recipes for ilastik docker containers
  Dockerfile MIT 1 0 0 1 Updated Jul 9, 2020

• ilastik-meta

  Small repo for tracking compatible versions of the ilastik subprojects via git submodules.
  4 0 0 0 Updated Jul 1, 2020

• cloud_ilastik

  APIs for running ilastik inside HPB infra
  Python 0 1 15 3 Updated Jun 15, 2020

• neuroglancer

  Forked from google/neuroglancer

  WebGL-based viewer for volumetric data
  TypeScript Apache-2.0 171 0 0 0 Updated May 14, 2020

• lazyflow Archived

  lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation
  Python 57 72 11 11 Updated Apr 20, 2020

• grpcio-feedstock

  Forked from m-novikov/grpcio-feedstock

  A conda-smithy repository for grpcio.
  Shell BSD-3-Clause 11 0 0 0 Updated Mar 10, 2020

• ilastikrag

  Forked from stuarteberg/ilastikrag

  ND Region Adjacency Graph with edge feature algorithms
  Jupyter Notebook 2 0 0 0 Updated Feb 25, 2020

• multiHypothesesTracking

  Forked from chaubold/multiHypothesesTracking
  C++ MIT 7 0 0 0 Updated Feb 20, 2020

• hytra

  Forked from chaubold/hytra

  Python module for multi HYpotheses TRAcking
  Python MIT 7 0 0 1 Updated Feb 13, 2020

• ilp-reader

  Read ilastik .ilp files
  Python MIT 0 0 0 0 Updated Feb 12, 2020

• nature_methods_multicut_pipeline

  connectomics neuron-segmentation
  Python 2 11 0 0 Updated Nov 25, 2019

• publish-conda-stack

  Scripts to update our published conda packages when our recipes have changed.
  Python MIT 3 0 2 0 Updated Oct 18, 2019

• ilastiktools

  Forked from DerThorsten/ilastiktools

  tools for carving
  C++ 3 0 0 1 Updated Sep 29, 2019

• hdf5-feedstock

  Forked from conda-forge/hdf5-feedstock

  A conda-smithy repository for hdf5.
  Fortran BSD-3-Clause 37 0 0 0 Updated Sep 27, 2019

• ilastik-teaching

  teaching material for ilastik
  Python 0 0 0 0 Updated Jun 20, 2019

• inferno-feedstock

  Forked from conda-forge/inferno-feedstock

  A conda-smithy repository for inferno.
  Shell BSD-3-Clause 3 0 0 0 Updated Jun 6, 2019

• ilastik-install
  Python 0 0 0 0 Updated Apr 16, 2019

• fastfilters

  Forked from svenpeter42/fastfilters

  fast gaussian and derivative convolutional filters
  C++ MIT 10 1 0 1 Updated Apr 10, 2019

• numpy-allocation-tracking

  Allocation tracking utility from the numpy source repo (which isn't installed by default), plus an extra module with some decorators.
  Python 1 2 0 0 Updated Apr 10, 2019