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Daniel Himmelstein dhimmel

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Open sourceror. Digital craftsman of the biodata revolution

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Pinned

manubot/rootstock

Clone me to create your Manubot manuscript

HTML 199 44
hetio/hetionet

Hetionet: an integrative network of disease

HTML 75 24
cognoma/cognoma

Putting machine learning in the hands of cancer biologists

Jupyter Notebook 88 29
obonet

OBO-formatted ontologies → networkx (Python 3)

Python 48 14
hetio/hetnetpy

Hetnets in Python (relocated from dhimmel/hetio)

Python 41 16
lincs

Library of Integrated Cellular Signatures L1000

Jupyter Notebook 12 3

2,050 contributions in the last year

Activity overview

Contributed to greenelab/meta-review, manubot/manubot, manubot/rootstock and 5 other repositories

Contribution activity

December 2019

Created a pull request in manubot/manubot that received 2 comments

process: add software versions to variables

refs manubot/rootstock#282

+63 −0 • 2 comments

process: YAML metadata use 'authors' not 'author_info' Dec 18
Expand url_to_citekey support Dec 13
CSL Item: Remove newlines in arXiv abstract Dec 13
zotero search_or_web_query to support URL or ID lookup Dec 12
url_to_citekey: convert from URL to citekey Dec 11

Update metadata.authors & USAGE Dec 18

Add general information for how to use this repo Dec 10

retire python 3.4, add python 3.8 Dec 9

bpo-29636: json.tool: Add document for indentation options. Dec 6

Update metadata.authors & USAGE Dec 18
update plugins based on upstream package changes Dec 13

Working disc model Dec 13
Word vector fix Dec 12

url_to_citekey: convert from URL to citekey Dec 11

bpo-29636: json.tool: Add document for indentation options. Dec 6

Add signature-gene weight to Participation model Dec 3

Created an issue in manubot/rootstock that received 7 comments

Figure tooltip includes whole manuscript

Hover over "Figure 1" at https://gweissman.github.io/icu_ml_ms/v/59d6bae8e44136e33978320d069ad7f8aa0cf22f/ and see: The figure tooltip includes …

7 comments

Creating a standard metadata format for scholarly documents Dec 18

Use translation-server to export directly to CSL JSON Dec 15

What service is used for title search? Dec 12

Possibility of posting study mansucript as a preprint? Dec 9

webpage: consider adding a header, footer, etcetera for navigation, branding, and metadata Dec 2

Joined the ResearchHub organization

ResearchHub

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