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. 2022 Apr 11:9:uhac017.
doi: 10.1093/hr/uhac017. eCollection 2022.

TEsorter: An accurate and fast method to classify LTR-retrotransposons in plant genomes

Ren-Gang Zhang  1   2 , Guang-Yuan Li  2 , Xiao-Ling Wang  3 , Jacques Dainat  4 , Zhao-Xuan Wang  5 , Shujun Ou  6 , Yongpeng Ma  1
Affiliations

TEsorter: An accurate and fast method to classify LTR-retrotransposons in plant genomes

Ren-Gang Zhang et al. Hortic Res. .
No abstract available

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Figures

Figure 1
Figure 1
(a) A flowchart illustrating the TEsorter pipeline. (b) Comparison of performance among six TE classifiers, including TEsorter. (c-f) High consistency between classifications of TEs assigned by TEsorter and predicted phylogenetic relationships between TEs based on the RT (99.06%, c), RH (99.29%, d), INT (99.62%, e), and concatenated RT–RH–INT (100%, f) domains in rice. Conflicting results are highlighted with black circles. For detailed information, see https://github.com/zhangrengang/TEsorter/tree/master/example_data. Branches are colored based on TEsorter classifications.
See this image and copyright information in PMC

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