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Installation Fails in New Conda Environment

Status: Open.

#527 In spacegraphcats/spacegraphcats;

· pgolder opened on Nov 25, 2025

explore Tinted De Bruijn graphs for k-mer to read indexing

Status: Open.

#516 In spacegraphcats/spacegraphcats;

· ctb opened on Feb 23, 2024

Error in bcalm_catlas_prepare_input

Status: Open.

#512 In spacegraphcats/spacegraphcats;

· ccbaumler opened on Jan 8, 2024

ModuleNotFoundError: No module named 'Cython' error when install sgc on EC2 instance

Status: Open.

#511 In spacegraphcats/spacegraphcats;

· jessicalumian opened on Dec 9, 2023

Interpretation of first_doms.txt

Status: Open.

#508 In spacegraphcats/spacegraphcats;

· alarasutcu opened on Nov 16, 2023

Error in make_contigs_kmer_index: ValueError: max() arg is an empty sequence

Status: Open.

#507 In spacegraphcats/spacegraphcats;

· taylorreiter opened on Oct 25, 2023

What should we benchmark?

Status: Open.

#485 In spacegraphcats/spacegraphcats;

· ccbaumler opened on Dec 20, 2022

look into GGCAT for compaction

Status: Open.

#470 In spacegraphcats/spacegraphcats;

· ctb opened on Oct 25, 2022

is it time for spacegraphcats v3?

Status: Open.

#469 In spacegraphcats/spacegraphcats;

· ctb opened on Sep 22, 2022

Snakemake error when building catlas

Status: Open.

#467 In spacegraphcats/spacegraphcats;

· christygrettenberger opened on Sep 19, 2022

are neighborhoods shell-like?

Status: Open.

#465 In spacegraphcats/spacegraphcats;

· ctb opened on Aug 23, 2022

figure out how to extract a subgraph and then run hmm annotation on that subgraph

Status: Open.

#464 In spacegraphcats/spacegraphcats;

· taylorreiter opened on Aug 4, 2022