Update protein.py#1174
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GzipFile reads files as objects ('rb' mode, text not implemented), therefore the .split() contains a "b" character in front.
The solution proposed is decoding the byte into strings.
JAGulin
reviewed
Sep 28, 2022
| @@ -73,17 +73,17 @@ | |||
| last_chain_label = None | |||
| for line in infile: | |||
| line = line.split() | |||
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This old example fails for me too, but I'd rather suggest converting the line in one go and drop the other changes. E.g.
line = line.decode("utf-8").split()
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Yes I agree, this is much easier and works.
JAGulin
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Sep 28, 2022
JAGulin
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JAGulin
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When updating anyway, the download URL should be changed to
https://files.rcsb.org/pub/pdb/data/structures/divided/pdb/q0/pdb%s.ent.gz
according to the documentation on
prabhuramachandran
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Oct 17, 2022
prabhuramachandran
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prabhuramachandran
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Thank you, I agree with @JAGulin that the one-line fix is much easier.
| @@ -73,17 +73,17 @@ | |||
| last_chain_label = None | |||
| for line in infile: | |||
| line = line.split() | |||
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Yes I agree, this is much easier and works.
Change the URL and also make the required changes.
prabhuramachandran
approved these changes
Oct 17, 2022
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|
I have made the necessary changes myself. Will fire the builds now. |
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GzipFile reads files as objects ('rb' mode, text not implemented), therefore the .split() contains a "b" character in front. The solution proposed is decoding the byte into strings.