data_AGS
#

_chem_comp.id                                   AGS
_chem_comp.name                                 "PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H16 N5 O12 P3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE
MONOTHIOPHOSPHATE
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        "SAP,ATG"
_chem_comp.formula_weight                       523.247
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AGS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1MMG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AGS  PG      PG      P  0  1  N  N  N  19.268  31.770  23.126  -5.637  -2.115   0.586  PG      AGS   1  
AGS  S1G     S1G     S  0  1  N  N  N  21.065  32.639  23.413  -7.391  -1.534   0.347  S1G     AGS   2  
AGS  O2G     O2G     O  0  1  N  N  N  18.713  31.367  24.546  -5.542  -2.991   1.934  O2G     AGS   3  
AGS  O3G     O3G     O  0  1  N  N  N  19.419  30.562  22.220  -5.194  -3.016  -0.672  O3G     AGS   4  
AGS  PB      PB      P  0  1  N  N  N  17.866  33.370  21.089  -4.304   0.389  -0.272  PB      AGS   5  
AGS  O1B     O1B     O  0  1  N  N  N  18.381  34.736  20.924  -4.199  -0.101  -1.664  O1B     AGS   6  
AGS  O2B     O2B     O  0  1  N  N  N  18.364  32.276  20.112  -5.464   1.501  -0.180  O2B     AGS   7  
AGS  O3B     O3B     O  0  1  N  N  N  18.173  32.841  22.584  -4.661  -0.841   0.705  O3B     AGS   8  
AGS  PA      PA      P  0  1  N  N  N  15.223  32.680  20.323  -1.862   2.050  -0.526  PA      AGS   9  
AGS  O1A     O1A     O  0  1  N  N  N  15.301  32.939  18.769  -1.736   1.711  -1.961  O1A     AGS  10  
AGS  O2A     O2A     O  0  1  N  N  N  15.270  31.169  20.572  -2.400   3.561  -0.377  O2A     AGS  11  
AGS  O3A     O3A     O  0  1  N  N  N  16.296  33.429  21.145  -2.901   1.039   0.176  O3A     AGS  12  
AGS  "O5'"   "O5'"   O  0  1  N  N  N  13.895  33.409  20.870  -0.424   1.920   0.185  "O5'"   AGS  13  
AGS  "C5'"   "C5'"   C  0  1  N  N  N  13.156  32.787  21.952   0.738   2.612  -0.278  "C5'"   AGS  14  
AGS  "C4'"   "C4'"   C  0  1  N  N  R  11.671  32.879  21.645   1.928   2.266   0.620  "C4'"   AGS  15  
AGS  "O4'"   "O4'"   O  0  1  N  N  N  11.338  34.239  21.298   2.268   0.878   0.468  "O4'"   AGS  16  
AGS  "C3'"   "C3'"   C  0  1  N  N  S  11.203  32.098  20.420   3.160   3.089   0.196  "C3'"   AGS  17  
AGS  "O3'"   "O3'"   O  0  1  N  N  N  11.227  30.645  20.593   3.609   3.911   1.276  "O3'"   AGS  18  
AGS  "C2'"   "C2'"   C  0  1  N  N  R   9.870  32.845  20.212   4.227   2.023  -0.153  "C2'"   AGS  19  
AGS  "O2'"   "O2'"   O  0  1  N  N  N   8.853  32.591  21.205   5.514   2.411   0.331  "O2'"   AGS  20  
AGS  "C1'"   "C1'"   C  0  1  N  N  R  10.315  34.261  20.396   3.702   0.778   0.607  "C1'"   AGS  21  
AGS  N9      N9      N  0  1  Y  N  N  10.700  34.897  19.153   4.195  -0.453  -0.016  N9      AGS  22  
AGS  C8      C8      C  0  1  Y  N  N  11.902  35.271  18.665   3.578  -1.161  -1.004  C8      AGS  23  
AGS  N7      N7      N  0  1  Y  N  N  11.791  36.062  17.588   4.295  -2.200  -1.321  N7      AGS  24  
AGS  C5      C5      C  0  1  Y  N  N  10.424  36.081  17.338   5.414  -2.225  -0.558  C5      AGS  25  
AGS  C6      C6      C  0  1  Y  N  N   9.656  36.702  16.326   6.523  -3.083  -0.458  C6      AGS  26  
AGS  N6      N6      N  0  1  N  N  N  10.064  37.403  15.377   6.627  -4.202  -1.266  N6      AGS  27  
AGS  N1      N1      N  0  1  Y  N  N   8.322  36.453  16.468   7.469  -2.794   0.429  N1      AGS  28  
AGS  C2      C2      C  0  1  Y  N  N   7.752  35.743  17.494   7.378  -1.728   1.204  C2      AGS  29  
AGS  N3      N3      N  0  1  Y  N  N   8.432  35.156  18.440   6.358  -0.898   1.145  N3      AGS  30  
AGS  C4      C4      C  0  1  Y  N  N   9.762  35.345  18.288   5.367  -1.102   0.284  C4      AGS  31  
AGS  HOG2    HOG2    H  0  0  N  N  N  19.339  31.619  25.214  -6.105  -3.777   1.933  HOG2    AGS  32  
AGS  H21     H21     H  0  1  N  N  N  20.331  30.463  21.973  -4.290  -3.354  -0.615  H21     AGS  33  
AGS  HOB2    HOB2    H  0  0  N  N  N  18.977  32.657  19.494  -5.589   1.867   0.706  HOB2    AGS  34  
AGS  HOA2    HOA2    H  0  0  N  N  N  15.336  30.713  19.741  -2.507   3.852   0.539  HOA2    AGS  35  
AGS  "H5'1"  "H5'1"  H  0  0  N  N  N  13.450  31.731  22.042   0.956   2.311  -1.302  "H5'1"  AGS  36  
AGS  "H5'2"  "H5'2"  H  0  0  N  N  N  13.372  33.309  22.896   0.558   3.687  -0.245  "H5'2"  AGS  37  
AGS  "H4'"   "H4'"   H  0  1  N  N  N  11.096  32.555  22.525   1.681   2.476   1.661  "H4'"   AGS  38  
AGS  "H3'"   "H3'"   H  0  1  N  N  N  11.865  32.361  19.582   2.929   3.700  -0.677  "H3'"   AGS  39  
AGS  "HO3'"  "HO3'"  H  0  0  N  N  N  10.925  30.226  19.796   4.383   4.450   1.064  "HO3'"  AGS  40  
AGS  "H2'"   "H2'"   H  0  1  N  N  N   9.494  32.679  19.191   4.257   1.839  -1.227  "H2'"   AGS  41  
AGS  "HO2'"  "HO2'"  H  0  0  N  N  N   8.073  33.091  20.995   5.845   3.235  -0.050  "HO2'"  AGS  42  
AGS  "H1'"   "H1'"   H  0  1  N  N  N   9.469  34.822  20.820   3.990   0.820   1.657  "H1'"   AGS  43  
AGS  H8      H8      H  0  1  N  N  N  12.846  34.968  19.093   2.634  -0.898  -1.457  H8      AGS  44  
AGS  HN61    HN61    H  0  0  N  N  N   9.287  37.698  14.822   5.930  -4.402  -1.910  HN61    AGS  45  
AGS  HN62    HN62    H  0  0  N  N  N  10.541  38.205  15.736   7.398  -4.786  -1.188  HN62    AGS  46  
AGS  H2      H2      H  0  1  N  N  N   6.675  35.665  17.520   8.169  -1.531   1.912  H2      AGS  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AGS  PG     S1G     DOUB  N  N   1  
AGS  PG     O2G     SING  N  N   2  
AGS  PG     O3G     SING  N  N   3  
AGS  PG     O3B     SING  N  N   4  
AGS  PB     O1B     DOUB  N  N   5  
AGS  PB     O2B     SING  N  N   6  
AGS  PB     O3B     SING  N  N   7  
AGS  PB     O3A     SING  N  N   8  
AGS  PA     O1A     DOUB  N  N   9  
AGS  PA     O2A     SING  N  N  10  
AGS  PA     O3A     SING  N  N  11  
AGS  PA     "O5'"   SING  N  N  12  
AGS  "O5'"  "C5'"   SING  N  N  13  
AGS  "C5'"  "C4'"   SING  N  N  14  
AGS  "C4'"  "O4'"   SING  N  N  15  
AGS  "C4'"  "C3'"   SING  N  N  16  
AGS  "O4'"  "C1'"   SING  N  N  17  
AGS  "C3'"  "O3'"   SING  N  N  18  
AGS  "C3'"  "C2'"   SING  N  N  19  
AGS  "C2'"  "O2'"   SING  N  N  20  
AGS  "C2'"  "C1'"   SING  N  N  21  
AGS  "C1'"  N9      SING  N  N  22  
AGS  N9     C8      SING  Y  N  23  
AGS  N9     C4      SING  Y  N  24  
AGS  C8     N7      DOUB  Y  N  25  
AGS  N7     C5      SING  Y  N  26  
AGS  C5     C6      SING  Y  N  27  
AGS  C5     C4      DOUB  Y  N  28  
AGS  C6     N6      SING  N  N  29  
AGS  C6     N1      DOUB  Y  N  30  
AGS  N1     C2      SING  Y  N  31  
AGS  C2     N3      DOUB  Y  N  32  
AGS  N3     C4      SING  Y  N  33  
AGS  O2G    HOG2    SING  N  N  34  
AGS  O3G    H21     SING  N  N  35  
AGS  O2B    HOB2    SING  N  N  36  
AGS  O2A    HOA2    SING  N  N  37  
AGS  "C5'"  "H5'1"  SING  N  N  38  
AGS  "C5'"  "H5'2"  SING  N  N  39  
AGS  "C4'"  "H4'"   SING  N  N  40  
AGS  "C3'"  "H3'"   SING  N  N  41  
AGS  "O3'"  "HO3'"  SING  N  N  42  
AGS  "C2'"  "H2'"   SING  N  N  43  
AGS  "O2'"  "HO2'"  SING  N  N  44  
AGS  "C1'"  "H1'"   SING  N  N  45  
AGS  C8     H8      SING  N  N  46  
AGS  N6     HN61    SING  N  N  47  
AGS  N6     HN62    SING  N  N  48  
AGS  C2     H2      SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AGS  SMILES            ACDLabs               12.01  "O=P(O)(OP(=S)(O)O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
AGS  InChI             InChI                 1.03   "InChI=1S/C10H16N5O12P3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(25-10)1-24-28(18,19)26-29(20,21)27-30(22,23)31/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H2,11,12,13)(H2,22,23,31)/t4-,6-,7-,10-/m1/s1"  
AGS  InChIKey          InChI                 1.03   NLTUCYMLOPLUHL-KQYNXXCUSA-N  
AGS  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O"  
AGS  SMILES            CACTVS                3.370  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O"  
AGS  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N"  
AGS  SMILES            "OpenEye OEToolkits"  1.7.6  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AGS  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(S)-hydroxy{[(S)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]adenosine"  
AGS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] bis(oxidanyl)phosphinothioyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AGS  "Create component"    1999-07-08  PDBJ  
AGS  "Modify descriptor"   2011-06-04  RCSB  
AGS  "Other modification"  2012-02-03  RCSB  
AGS  "Other modification"  2013-02-04  RCSB  
AGS  "Modify synonyms"     2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AGS  ATP-GAMMA-S                                   ?  ?  
2  AGS  "ADENOSINE 5'-(3-THIOTRIPHOSPHATE)"           ?  ?  
3  AGS  "ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE)"       ?  ?  
4  AGS  "ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE"  ?  ?  
##
